Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs17523495 chr5:34840488 C/T 0.000187 114 41.22 42.9 28.43 KM Plot
THYM rs17550219 chr10:13976373 C/T 0.000307 118 49.4 35 12.87 KM Plot
THYM rs17581744 chr4:78141824 A/C 7.48E-6 119 31.72 45.87 39.75 KM Plot
THYM rs17590981 chr19:29315606 C/G 7.96E-6 119 22.9 41.77 46.6 KM Plot
THYM rs17591634 chr19:29331628 A/C 1.47E-10 119 27.83 42.25 43.27 KM Plot
THYM rs17603986 chr7:29690489 C/T 5.69E-13 118 38.33 44.3 6 KM Plot
THYM rs17604090 chr7:29691438 C/T 4.3E-13 119 37.63 48.18 6 KM Plot
THYM rs17651528 chr15:93974182 C/T 3.31E-13 118 38.9 50.07 6 KM Plot
THYM rs17651539 chr15:93975923 G/T 4.24E-13 117 40.67 50.07 6 KM Plot
THYM rs17661896 chr7:29692708 G/A 4.29E-13 119 38.13 46.27 6 KM Plot
THYM rs17661938 chr7:29693378 C/T 4.29E-13 119 38.13 46.27 6 KM Plot
THYM rs17663727 chr8:50131840 C/T 7.83E-11 117 46.43 50.1 24.87 KM Plot
THYM rs17664982 chr8:50201570 T/C 2.31E-10 119 46.07 50.82 25.83 KM Plot
THYM rs17669356 chr6:16693086 A/G 2.59E-5 119 41.22 36.4 53.63 KM Plot
THYM rs17696204 chr8:135592646 T/C 4.6E-13 119 38.83 50.97 6 KM Plot