Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs17523495 | chr5:34840488 | C/T | 0.000187 | 114 | 41.22 | 42.9 | 28.43 | KM Plot |
THYM | rs17550219 | chr10:13976373 | C/T | 0.000307 | 118 | 49.4 | 35 | 12.87 | KM Plot |
THYM | rs17581744 | chr4:78141824 | A/C | 7.48E-6 | 119 | 31.72 | 45.87 | 39.75 | KM Plot |
THYM | rs17590981 | chr19:29315606 | C/G | 7.96E-6 | 119 | 22.9 | 41.77 | 46.6 | KM Plot |
THYM | rs17591634 | chr19:29331628 | A/C | 1.47E-10 | 119 | 27.83 | 42.25 | 43.27 | KM Plot |
THYM | rs17603986 | chr7:29690489 | C/T | 5.69E-13 | 118 | 38.33 | 44.3 | 6 | KM Plot |
THYM | rs17604090 | chr7:29691438 | C/T | 4.3E-13 | 119 | 37.63 | 48.18 | 6 | KM Plot |
THYM | rs17651528 | chr15:93974182 | C/T | 3.31E-13 | 118 | 38.9 | 50.07 | 6 | KM Plot |
THYM | rs17651539 | chr15:93975923 | G/T | 4.24E-13 | 117 | 40.67 | 50.07 | 6 | KM Plot |
THYM | rs17661896 | chr7:29692708 | G/A | 4.29E-13 | 119 | 38.13 | 46.27 | 6 | KM Plot |
THYM | rs17661938 | chr7:29693378 | C/T | 4.29E-13 | 119 | 38.13 | 46.27 | 6 | KM Plot |
THYM | rs17663727 | chr8:50131840 | C/T | 7.83E-11 | 117 | 46.43 | 50.1 | 24.87 | KM Plot |
THYM | rs17664982 | chr8:50201570 | T/C | 2.31E-10 | 119 | 46.07 | 50.82 | 25.83 | KM Plot |
THYM | rs17669356 | chr6:16693086 | A/G | 2.59E-5 | 119 | 41.22 | 36.4 | 53.63 | KM Plot |
THYM | rs17696204 | chr8:135592646 | T/C | 4.6E-13 | 119 | 38.83 | 50.97 | 6 | KM Plot |